Numerous threats have impacted and still impact today the populations of the European pond turtle. In addition to pollution, the main threat remains the destruction of wetlands. The drying up of wetland areas for urbanization and agriculture leads to a reduction in vital space and the fragmentation of territory, causing a decline in the numbers of European pond turtles. Fish traps placed in rivers in the 19th century trapped turtles and caused their death by drowning, greatly contributing to the population decline in France, Spain, and Portugal. Furthermore, many takings still occur despite the protection of this species.
The European pond turtle has also suffered from competition with the Florida turtle, introduced by humans into its natural habitat. Indeed, this American turtle, sold in large numbers in pet stores in the 1980s, turned out to be very cumbersome and was released in great numbers into the wild where it acclimated perfectly. However, the European pond turtle and the Florida turtle have the same ecological niche, which means they live in the same environments, have a similar life cycle, and consume the same food resources. However, the Florida turtle, which is larger, heavier, and more aggressive than the European pond turtle, has taken over. Moreover, the Florida turtle lays its eggs in a hole deeper than the European pond turtle, which means it unearths the European pond turtle eggs when it lays its own.
The European pond turtle benefits from a national action plan and is protected in France and in Europe. There are reintroduction programs for the pond turtle.